http://awn.theopenmat.com/2012/10/proposal-if-there-is-to-be-a-dual-national-championship/First, let me say that it was an interesting read and a reasonable proposal, IMO.
That said, I think the basic premise of having a dual championship after the traditional NCAA tournament is flawed. Any hybrid model, again IMO, would be better off to have a dual tournament that awards either team points or qualifiers to teams for the championship tournament as it stands now. The biggest reason for this is that the final matches of the NCAA wrestling season should always be the top-20 individuals in the sport battling for glory. There is no better way to finish and asking our athletes to come back off of that massive success or utter dissapointment and get up again for a team championship is just a bad idea.
As to the specifics of JB's proposal, the one thing I had a big problem with other than order of events is having the top-16 teams at the individual tournament qualify. At that level we are talking about teams that are seperated by very few points (11-20 last year was seperated by 8 points, 4 teams outside the top 16 were one extra default away from at least tieing for 16th) which raises the real possibility of someone qualifying for the tournament because of a medical forfeit or some other fluke event. When you add conference affiliations into the mix it seems to me that the chance for conspiracy and controversy is much too great.